Chenghao's Project Site¶
Research Studies¶
Github Projects¶
A data processing pipeline for extracellular RNA-seq from extracellular vesicles and exosomes. The pipeline is built with the python pipeline framework snakemake
A collection of python scripts fo routinely used activity when dealing with high throughput sequencing data
R package for storing, handling, anlyzing, and visualizing high though-put experiment data, such as metabolomics and proteomics.
A shiny app wrapped in an R package for metabolomics data analysis, including data normalization, linear model, multivariable analysis and network analysis.
R package to perform enrichment analysis
R package for model selection for covariates.
R package for storing, handling, analyzing and visualizing phylogenic sequencing data in different phylogenic levels.
R package for generating clustered and annotated heatmaps using ggplot2 package.
R package with encapsulated functions to generate different plots that is frequently used, such as boxplot and scatterplot.
Softwares/Apps¶
This is more a show case for the ShinyMetabase. My server is not powerful enough to handle large dataset. Install the package and run on your local machine is recommended for now.
This app has two parts. A user's interface to record daily diet intake, and an admin's dashboard to manage all users and see all of their records.
An app allows you to copy paste your data from Excel and run linear model.
An app to run power calculator with given means and SDs of two groups.