Publications

Chenghao Zhu, Nicole Zeltser, Jieun Oh, Constance H. Li, Paul C. Boutros (2026). Sex differences in the cancer proteome. BMJ Oncology.
Yash Patel, Chenghao Zhu, Takafumi N. Yamaguchi, Nicholas K. Wang, Nicholas Wiltsie, Nicole Zeltser, Alfredo E. Gonzalez, Helena Winata, Yu Pan, Mohammed Faizal Eeman Mootor, Timothy Sanders, Sorel T. Fitz-Gibbon, Cyriac Kandoth, Julie Livingstone, Lydia Liu, Benjamin Carlin, Aaron Holmes, Jieun Oh, John M. Sahrmann, Shu Tao, Stefan E. Eng, Rupert Hugh-White, Kiarod Pashminehazar, Arpi Beshlikyan, Madison Jordan, Selina Wu, Mao Tian, Jaron Arbet, Beth K. Neilsen, Roni Haas, Yuan Zhe Bugh, Gina Kim, Joseph Salmingo, Wenshu Zhang, Aakarsh Anand, Edward Hwang, Anna Neiman-Golden, Philippa Steinberg, Wenyan Zhao, Prateek Anand, Raag Agrawal, Brandon L. Tsai, Paul C. Boutros (2026). Metapipeline-DNA: A comprehensive germline and somatic genomics Nextflow pipeline. Cell Reports Methods.
Code DOI
Joanne K. Agus, Oscar M. Muñoz Herrera, Christopher H. Rhodes, Jack Jingyuan Zheng, Chenghao Zhu, Maurice Wong, Xinyu Tang, Izumi Maezawa, Lee-Way Jin, Carlito B. Lebrilla, Danielle J. Harvey, Angela M. Zivkovic (2025). HDL from 36-h fasted participants potently promotes efflux of cholesteryl ester from activated microglia. Frontiers in Aging Neuroscience.
Chenghao Zhu, Lydia Y Liu, Annie Ha, Takafumi N Yamaguchi, Helen Zhu, Rupert Hugh-White, Julie Livingstone, Yash Patel, Thomas Kislinger, Paul C Boutros (2025). Identification of non-canonical peptides with moPepGen. Nature Biotechnology.
Code DOI
Lee W. Jones, Jessica A. Lavery, Brandon L. Tsai, Chaya S. Moskowitz, Catherine P. Lee, Jenna Harrison, Meghan Michalski, Kurtis Stoeckel, Courtenay Graham, Neil M. Iyengar, Umesh Bhanot, Irina Linkov, Mala Jain, Maxine S. Jochelson, Mara Monetti, Victoria L. Seewaldt, Melissa Pilewskie, Patrick Pribil, Chenghao Zhu, Jaron Arbet, Debra A. Mangino, Paul C. Boutros (2025). A Co-clinical Trial of Exercise Therapy in Breast Cancer Prevention. Clinical Cancer Research.
Roni Haas, Gavin Frame, Shahbaz Khan, Beth K. Neilsen, Boon Hao Hong, Celestia P.X. Yeo, Takafumi N. Yamaguchi, Enya H.W. Ong, Wenyan Zhao, Benjamin Carlin, Eugenia L.L. Yeo, Kah Min Tan, Yuan Zhe Bugh, Chenghao Zhu, Rupert Hugh-White, Julie Livingstone, Dennis J.J. Poon, Pek Lim Chu, Yash Patel, Shu Tao, Vladimir Ignatchenko, Natalie J. Kurganovs, Geoff S. Higgins, Michelle R. Downes, Andrew Loblaw, Danny Vesprini, Amar U. Kishan, Melvin L.K. Chua, Thomas Kislinger, Paul C. Boutros, Stanley K. Liu (2024). The Proteogenomics of Prostate Cancer Radioresistance. Cancer Research Communications.
Yash Patel, Chenghao Zhu, Takafumi N. Yamaguchi, Yuan Zhe Bugh, Mao Tian, Aaron Holmes, Sorel Fitz-Gibbon, Paul C. Boutros (2024). NFTest: automated testing of Nextflow pipelines. Bioinformatics.
Code DOI
Brian V. Hong, Christopher Rhodes, Joanne Agus, Xinyu Tang, Chenghao Zhu, Jack Jingyuan Zheng, Angela M. Zivkovic (2023). A single 36-h water-only fast vastly remodels the plasma lipidome. Frontiers in Cardiovascular Medicine.
Christopher Rhodes, Chenghao Zhu, Joanne K. Agus, Xinyu Tang, Qianyan Li, JoAnne Engebrecht, Angela M. Zivkovic (2022). Human fasting modulates macrophage function and upregulates multiple bioactive metabolites that extend lifespan in Caenorhabditis elegans: a pilot clinical study. The American Journal of Clinical Nutrition.
Jennyfer Tena, Izumi Maezawa, Mariana Barboza, Maurice Wong, Chenghao Zhu, Michael Russelle Alvarez, Lee-Way Jin, Angela M. Zivkovic, Carlito B. Lebrilla (2022). Regio-Specific N-Glycome and N-Glycoproteome Map of the Elderly Human Brain With and Without Alzheimer’s Disease. Molecular & Cellular Proteomics.