Function reference • HTSet

All functions
`$`(<HTSet>) `$`(<HTSet>) `$<-`(<HTSet>) `[[`(<HTSet>,<character>) `[[<-`(<HTSet>,<character>) `[`(<HTSet>)	Extract or replace parts of an HTSet object
`HTSet-class`	HTSet
`HTSet()`	HTSet S4 class constructur
`barplot()`	barplot for fet enrichment test
`dim(<HTSet>)` `nsamples(<HTSet>)` `nfeatures(<HTSet>)`	Get dimemsions
`ecdf()`	ecdf plot for kst enrichment test
`enrichment_test()`	Enrichment test
`exrna`	exRNA from human isolated HDL
`featureNames(<HTSet>)` `featureNames<-`(<HTSet>)	Get or set the feature names of an HTSet object
`format_lipid_name()`	format lipid names
`hist(<ModelFit>)`	p value histogram
`lipidome`	lipidomics dataset from human isolated HDL
`model_fit()`	statistic tests for HTSet
`mz2molwt()`	m/z to molecular weight
`nCarbons()`	Extract the carbon chain length
`nDoubleBonds()`	number of double bonds
`nFattyAcyls()`	number of fatty acyls
`plot_boxplot()`	make a boxplot
`sampleNames(<HTSet>)` `sampleNames<-`(<HTSet>)	Get or set the sample names of an HTSet object
`subset_features()`	Subset features
`subset_samples()`	Subset samples
`summarize_ACL()`	summarize average carbon chain length
`summarize_EOD()`	Equivalent Double Bond per 18 carbons
`summarize_feature()`	Summarize by feature variable
`summarize_lipid_ratios()`	Calculate lipid classes ratios
`summarize_odd_chain()`	summarize odd chain lipids
`transform_by_feature()`	Transform by feature
`transform_by_sample()`	Transform by sample
`volcanoplot(<ModelFit>)`	volcano plot
`wcmc_adduct()`	show wcmc's adduct table

Reference